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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
510
ChIP-seq
154
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
510
DNA binding
157
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
326
transcription factor
101
control
82
recombinant protein
80
histone modification
79
histone
57
RNA binding protein
50
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
314
November, 2017
193
May, 2020
63
December, 2017
53
November, 2018
26
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
January, 2019
4
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
676
bam
617
bigWig
460
fastq
441
bed narrowPeak
358
bigBed narrowPeak
169
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
676
Homo sapiens
Biosample type
361
cell line
288
tissue
15
in vitro differentiated cells
12
primary cell
Organ
689
pancreas
676
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
57
musculature of body
42
blood
42
bodily fluid
42
nerve
36
embryo
20
vein
18
ureter
17
spleen
8
skeleton
7
eye
1
pericardium
1
pituitary gland
0
skin of body
Project
676
AMP
Genome assembly (visualization)
580
hg19
526
GRCh38
Lab
676
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
January, 2019
BIOSAMPLE
ASSAY
676 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
359
1
1
tissue
liver
122
147
2
1
right lobe of liver
10
2
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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