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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
418
ChIP-seq
159
total RNA-seq
21
ATAC-seq
5
DNase-seq
3
small RNA-seq
1
Hi-C
1
WGBS
Assay category
418
DNA binding
162
Transcription
26
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
331
transcription factor
81
recombinant protein
71
histone modification
70
histone
54
RNA binding protein
47
narrow histone mark
23
broad histone mark
22
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
170
May, 2020
52
November, 2018
36
December, 2017
20
May, 2022
18
August, 2017
17
August, 2021
8
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
1
March, 2020
Available data
666
bam
608
bigWig
450
fastq
427
bed narrowPeak
344
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
608
Homo sapiens
Biosample type
332
cell line
265
tissue
in vitro differentiated cells
11
primary cell
Organ
621
pancreas
608
liver
513
connective tissue
425
adipose tissue
281
epithelium
223
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
18
ureter
16
spleen
15
vein
8
embryo
6
eye
1
pericardium
1
pituitary gland
0
skin of body
Project
608
AMP
Genome assembly (visualization)
603
hg19
514
GRCh38
Lab
574
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
608 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
tissue
liver
82
147
20
2
1
right lobe of liver
7
2
1
1
2
primary cell
hepatocyte
3
5
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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