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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
432
ChIP-seq
159
total RNA-seq
23
ATAC-seq
5
DNase-seq
3
small RNA-seq
1
Hi-C
1
WGBS
Assay category
432
DNA binding
162
Transcription
28
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
333
transcription factor
83
histone modification
82
histone
81
recombinant protein
56
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
170
May, 2020
52
November, 2018
50
December, 2017
20
May, 2022
18
August, 2017
17
August, 2021
8
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
1
February, 2021
1
March, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
624
Homo sapiens
Biosample type
333
cell line
265
tissue
14
in vitro differentiated cells
12
primary cell
Organ
661
pancreas
624
liver
573
connective tissue
427
adipose tissue
315
epithelium
267
heart
223
brain
198
vasculature
195
kidney
193
blood vessel
128
artery
97
limb
68
musculature of body
66
bone element
55
blood
55
bodily fluid
33
eye
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
8
skeleton
1
pericardium
1
pituitary gland
0
skin of body
Project
624
AMP
Genome assembly (visualization)
619
hg19
530
GRCh38
Lab
590
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
624 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
1
tissue
liver
82
147
20
2
1
right lobe of liver
7
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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