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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
384
ChIP-seq
159
total RNA-seq
21
ATAC-seq
3
small RNA-seq
2
DNase-seq
1
Hi-C
Assay category
384
DNA binding
162
Transcription
23
DNA accessibility
1
3D chromatin structure
Target of assay
285
transcription factor
83
histone modification
82
histone
66
recombinant protein
52
narrow histone mark
37
RNA binding protein
30
broad histone mark
18
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
170
May, 2020
November, 2018
50
December, 2017
20
May, 2022
18
August, 2017
17
August, 2021
8
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
1
March, 2020
Available data
628
bam
570
bigWig
412
fastq
390
bed narrowPeak
307
bigBed narrowPeak
174
tsv
86
tagAlign
60
bed broadPeak
60
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
570
Homo sapiens
Biosample type
287
cell line
258
tissue
14
in vitro differentiated cells
11
primary cell
Organ
616
pancreas
570
liver
569
connective tissue
424
adipose tissue
301
epithelium
224
heart
220
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
43
blood
43
bodily fluid
31
nerve
29
embryo
18
ureter
15
vein
10
spleen
6
eye
1
pericardium
1
pituitary gland
0
skin of body
Project
570
AMP
Genome assembly (visualization)
568
hg19
476
GRCh38
Lab
536
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2018
BIOSAMPLE
ASSAY
570 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
DNase-seq
Hi-C
cell line
HepG2
282
5
tissue
liver
78
147
20
1
right lobe of liver
7
2
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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