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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
489
ChIP-seq
189
total RNA-seq
24
ATAC-seq
5
WGBS
4
DNase-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
489
DNA binding
193
Transcription
28
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
305
transcription factor
95
control
86
histone modification
85
histone
82
recombinant protein
54
RNA binding protein
53
narrow histone mark
32
broad histone mark
20
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
8
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
June, 2019
1
December, 2018
1
February, 2020
Available data
616
bam
570
bigWig
402
fastq
389
bed narrowPeak
306
bigBed narrowPeak
174
tsv
86
tagAlign
61
bed broadPeak
61
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
727
Homo sapiens
Biosample type
401
cell line
314
tissue
12
primary cell
Organ
942
pancreas
726
liver
666
connective tissue
490
adipose tissue
485
epithelium
358
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
25
spleen
24
embryo
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
727
AMP
Genome assembly (visualization)
573
hg19
479
GRCh38
Lab
656
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
December, 2017
June, 2019
BIOSAMPLE
ASSAY
727 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
2
2
1
tissue
liver
107
167
20
3
2
1
1
1
1
1
right lobe of liver
3
1
1
2
2
islet of Langerhans
1
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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