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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
Assay category
68
DNA binding
Target of assay
389
transcription factor
114
control
104
histone modification
103
histone
82
recombinant protein
68
RNA binding protein
61
narrow histone mark
42
broad histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
34
November, 2017
21
November, 2018
6
January, 2019
4
December, 2017
2
December, 2018
1
August, 2021
Available data
67
bam
67
fastq
66
bed narrowPeak
66
bigWig
65
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
68
Homo sapiens
Biosample type
64
cell line
2
in vitro differentiated cells
2
tissue
Organ
58
liver
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
8
epithelium
6
heart
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
0
skin of body
Project
68
AMP
Genome assembly (visualization)
65
hg19
61
GRCh38
Lab
67
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
cell line
HepG2
54
GM12878
10
in vitro differentiated cells
hepatocyte
2
tissue
liver
1
right lobe of liver
1
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