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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
Assay category
67
DNA binding
Target of assay
357
transcription factor
254
histone modification
253
histone
161
control
133
narrow histone mark
120
broad histone mark
82
recombinant protein
67
RNA binding protein
23
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
34
November, 2017
19
November, 2018
6
October, 2018
4
December, 2017
2
August, 2017
1
August, 2021
1
November, 2019
Available data
66
bam
65
bigWig
65
fastq
64
bed narrowPeak
61
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
tar
Organism
67
Homo sapiens
Biosample type
55
cell line
10
tissue
2
in vitro differentiated cells
Organ
58
liver
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
8
epithelium
6
heart
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
0
skin of body
Project
67
AMP
Genome assembly (visualization)
64
hg19
60
GRCh38
Lab
66
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
BIOSAMPLE
ASSAY
67 results
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Clear Filters
ChIP-seq
cell line
HepG2
54
EndoC_BH1
1
tissue
body of pancreas
5
islet of Langerhans
2
liver
1
pancreas
1
right lobe of liver
1
in vitro differentiated cells
hepatocyte
2
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