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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
425
ChIP-seq
24
ATAC-seq
6
DNase-seq
Assay category
425
DNA binding
30
DNA accessibility
Target of assay
335
transcription factor
87
histone modification
86
histone
81
recombinant protein
56
RNA binding protein
53
narrow histone mark
33
broad histone mark
23
chromatin remodeller
5
other context
5
other post-translational modification
Date released
249
November, 2017
55
November, 2018
50
December, 2017
27
May, 2020
20
May, 2022
18
August, 2017
17
August, 2021
6
January, 2019
6
October, 2019
3
December, 2018
2
June, 2019
1
February, 2021
1
October, 2017
Available data
705
bam
638
bigWig
489
fastq
455
bed narrowPeak
371
bigBed narrowPeak
175
tsv
86
tagAlign
64
bed broadPeak
64
bigBed broadPeak
14
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
455
Homo sapiens
Biosample type
308
cell line
127
tissue
14
in vitro differentiated cells
6
primary cell
Organ
441
liver
214
pancreas
203
brain
183
kidney
151
epithelium
151
heart
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
455
AMP
Genome assembly (visualization)
451
hg19
381
GRCh38
Lab
421
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
455 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
307
1
tissue
liver
82
20
2
spleen
12
1
1
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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