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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
364
ChIP-seq
6
DNase-seq
1
ATAC-seq
Assay category
364
DNA binding
7
DNA accessibility
Target of assay
320
transcription factor
81
recombinant protein
55
RNA binding protein
41
histone
41
histone modification
25
broad histone mark
23
chromatin remodeller
16
narrow histone mark
5
other context
5
other post-translational modification
Date released
249
November, 2017
55
November, 2018
50
December, 2017
6
August, 2017
6
January, 2019
3
December, 2018
2
June, 2019
Available data
705
bam
638
bigWig
489
fastq
455
bed narrowPeak
371
bigBed narrowPeak
175
tsv
86
tagAlign
64
bed broadPeak
64
bigBed broadPeak
14
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
371
Homo sapiens
Biosample type
293
cell line
62
tissue
14
in vitro differentiated cells
2
primary cell
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
371
AMP
Genome assembly (visualization)
367
hg19
339
GRCh38
Lab
371
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
371 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
293
tissue
liver
38
2
spleen
12
1
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatic stellate cell
1
hepatocyte
1
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