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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
522
ChIP-seq
46
total RNA-seq
24
ATAC-seq
7
DNase-seq
7
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
522
DNA binding
50
Transcription
31
DNA accessibility
9
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
344
transcription factor
93
control
82
histone modification
82
recombinant protein
81
histone
58
RNA binding protein
46
broad histone mark
35
narrow histone mark
23
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
May, 2020
63
December, 2017
62
November, 2018
54
August, 2017
40
May, 2022
35
August, 2021
12
January, 2019
10
July, 2019
8
December, 2018
7
October, 2019
5
December, 2019
4
March, 2020
3
February, 2021
2
June, 2019
1
February, 2020
1
October, 2017
Available data
512
bam
489
fastq
468
bigWig
428
bed narrowPeak
371
bigBed narrowPeak
64
bed broadPeak
64
bigBed broadPeak
36
tagAlign
31
tsv
14
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
622
Homo sapiens
Biosample type
400
cell line
193
tissue
15
in vitro differentiated cells
14
primary cell
Organ
946
pancreas
684
connective tissue
597
liver
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
622
AMP
Genome assembly (visualization)
469
hg19
385
GRCh38
Lab
551
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
May, 2020
BIOSAMPLE
ASSAY
622 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
1
2
1
tissue
liver
95
24
20
2
3
1
1
1
1
1
spleen
20
1
1
2
1
right lobe of liver
10
3
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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