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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
109
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
2
pCHi-C
1
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
174
Transcription
109
DNA binding
25
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
170
May, 2020
43
August, 2017
40
May, 2022
36
December, 2017
8
July, 2019
7
November, 2018
6
October, 2019
4
March, 2020
1
February, 2020
1
February, 2021
Available data
265
bigWig
245
bam
155
tsv
113
bed narrowPeak
63
fastq
49
bigBed narrowPeak
44
tagAlign
5
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
316
Homo sapiens
Biosample type
341
cell line
316
tissue
14
in vitro differentiated cells
13
primary cell
Organ
523
connective tissue
476
pancreas
464
adipose tissue
315
liver
297
heart
293
kidney
240
brain
158
bone element
117
blood vessel
117
vasculature
105
limb
78
musculature of body
66
artery
56
eye
32
nerve
20
lung
18
ureter
17
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
316
AMP
Genome assembly (visualization)
267
hg19
237
GRCh38
Lab
276
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
target.investigated_as!
control
BIOSAMPLE
ASSAY
316 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
pCHi-C
Hi-C
RRBS
single cell RNA-seq
tissue
liver
167
102
20
2
3
1
1
1
1
1
right lobe of liver
3
7
1
2
1
2
bladder (urinary bladder)
1
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