Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
569
ChIP-seq
189
total RNA-seq
23
ATAC-seq
8
DNase-seq
Hi-C
5
WGBS
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
FAIRE-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
569
DNA binding
193
Transcription
32
DNA accessibility
7
DNA methylation
1
DNA sequencing
Target of assay
338
transcription factor
118
histone modification
117
histone
110
control
82
recombinant protein
66
narrow histone mark
58
RNA binding protein
51
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
34
August, 2021
27
October, 2019
9
July, 2019
5
December, 2019
5
January, 2019
3
February, 2021
2
June, 2019
2
March, 2020
1
February, 2020
Available data
701
bam
636
bigWig
464
fastq
454
bed narrowPeak
371
bigBed narrowPeak
174
tsv
86
tagAlign
67
bed broadPeak
67
bigBed broadPeak
14
bed bed3+
4
tar
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
csv
1
vcf
Organism
807
Homo sapiens
Biosample type
399
cell line
360
tissue
33
primary cell
15
in vitro differentiated cells
Organ
937
pancreas
787
liver
683
connective tissue
516
epithelium
491
adipose tissue
353
kidney
350
heart
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
807
AMP
Genome assembly (visualization)
637
hg19
543
GRCh38
Lab
737
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
Hi-C
BIOSAMPLE
ASSAY
807 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
FAIRE-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
2
1
tissue
liver
145
167
20
2
3
1
1
1
1
right lobe of liver
10
3
1
2
1
2
primary cell
endothelial cell of umbilical vein
17
2
1
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
15
Download