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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
569
ChIP-seq
189
total RNA-seq
22
ATAC-seq
8
DNase-seq
6
Hi-C
5
WGBS
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
whole genome sequencing assay
Assay category
569
DNA binding
192
Transcription
31
DNA accessibility
7
DNA methylation
6
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
118
histone modification
117
histone
110
control
82
recombinant protein
66
narrow histone mark
58
RNA binding protein
51
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
35
August, 2021
28
October, 2019
10
July, 2019
5
December, 2019
5
January, 2019
4
March, 2020
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
700
bam
637
bigWig
465
fastq
453
bed narrowPeak
371
bigBed narrowPeak
174
tsv
86
tagAlign
67
bed broadPeak
67
bigBed broadPeak
14
bed bed3+
4
hic
4
tar
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
1
hdf5
1
vcf
Organism
810
Homo sapiens
Biosample type
399
cell line
360
tissue
36
primary cell
15
in vitro differentiated cells
Organ
914
pancreas
788
liver
492
epithelium
346
kidney
287
heart
286
brain
229
connective tissue
170
vasculature
164
blood vessel
116
limb
105
adipose tissue
96
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
810
AMP
Genome assembly (visualization)
640
hg19
542
GRCh38
Lab
739
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
audit script error
1
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
February, 2021
BIOSAMPLE
ASSAY
810 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
small RNA-seq
RRBS
STARR-seq
pCHi-C
FAIRE-seq
whole genome sequencing assay
cell line
HepG2
378
14
2
1
2
1
1
tissue
liver
145
167
20
2
1
3
1
1
1
right lobe of liver
10
3
1
2
1
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
15
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