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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
21
total RNA-seq
20
ATAC-seq
4
WGBS
1
DNase-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
23
DNA binding
22
Transcription
21
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
3
control
Date released
40
May, 2022
28
August, 2017
2
March, 2020
1
February, 2020
1
February, 2021
1
July, 2019
Available data
bam
265
bigWig
154
tsv
113
bed narrowPeak
83
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
73
Homo sapiens
Biosample type
73
tissue
35
cell line
2
primary cell
Organ
201
kidney
181
heart
92
bone element
76
pancreas
73
liver
53
eye
48
connective tissue
47
adipose tissue
46
blood vessel
46
vasculature
39
artery
39
brain
38
musculature of body
19
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
73
AMP
Genome assembly (visualization)
22
hg19
Lab
40
Karen Mohlke, UNC
33
AMP-T2D consortium
files.file_type!
bam
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
23
20
20
3
1
1
1
1
right lobe of liver
1
1
1
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