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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
28
ChIP-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
31
Transcription
28
DNA binding
6
DNA methylation
4
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
7
control
1
transcription factor
Date released
28
August, 2017
20
May, 2022
17
August, 2021
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
May, 2020
1
November, 2017
Available data
bam
622
bigWig
465
fastq
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
76
Homo sapiens
Biosample type
53
tissue
21
cell line
2
primary cell
Organ
250
pancreas
194
epithelium
146
kidney
106
heart
93
bone element
86
connective tissue
76
liver
46
adipose tissue
42
brain
27
eye
26
musculature of body
19
lung
16
vasculature
15
blood vessel
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
76
AMP
Genome assembly (visualization)
6
hg19
Lab
39
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
files.file_type!
bam
bed narrowPeak
BIOSAMPLE
ASSAY
76 results
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Clear Filters
total RNA-seq
ChIP-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
20
23
1
3
1
1
1
right lobe of liver
1
1
1
cell line
HepG2
9
5
2
2
2
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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