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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
33
total RNA-seq
20
ATAC-seq
8
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
43
DNA binding
34
Transcription
21
DNA accessibility
8
3D chromatin structure
6
DNA methylation
1
DNA sequencing
Target of assay
24
histone
24
histone modification
13
broad histone mark
12
transcription factor
11
narrow histone mark
7
control
1
RNA binding protein
Date released
40
May, 2022
31
August, 2021
28
August, 2017
7
July, 2019
4
February, 2020
2
February, 2021
2
March, 2020
1
December, 2018
1
May, 2020
1
November, 2017
1
October, 2019
Available data
bam
713
bigWig
533
bed narrowPeak
465
fastq
442
bigBed narrowPeak
181
tsv
99
bed broadPeak
99
bigBed broadPeak
86
tagAlign
49
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
118
Homo sapiens
Biosample type
81
tissue
35
cell line
2
primary cell
Organ
256
pancreas
210
kidney
206
epithelium
182
heart
110
liver
93
bone element
90
connective tissue
54
eye
51
vasculature
50
blood vessel
48
adipose tissue
43
brain
39
artery
39
musculature of body
19
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
118
AMP
Genome assembly (visualization)
40
hg19
Lab
47
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
files.file_type!
bam
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
23
20
20
1
3
1
1
1
gastrocnemius medialis
1
4
right lobe of liver
1
1
1
islet of Langerhans
1
tibial artery
1
+ See 1 more…
cell line
HepG2
19
9
2
2
2
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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