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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
20
ATAC-seq
19
ChIP-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
31
Transcription
21
DNA accessibility
19
DNA binding
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
23
histone
histone modification
13
broad histone mark
12
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
40
May, 2022
28
August, 2021
8
August, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
May, 2020
1
November, 2017
Available data
bam
539
bigWig
420
fastq
360
bed narrowPeak
323
bigBed narrowPeak
174
tsv
49
bed broadPeak
49
bigBed broadPeak
28
tagAlign
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
87
Homo sapiens
Biosample type
53
tissue
32
cell line
2
primary cell
Organ
242
pancreas
210
kidney
206
epithelium
146
heart
93
bone element
87
liver
52
eye
51
vasculature
50
blood vessel
46
connective tissue
39
artery
22
brain
20
musculature of body
19
lung
17
adipose tissue
9
blood
9
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
87
AMP
Genome assembly (visualization)
37
hg19
Lab
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
19
AMP-T2D consortium
files.file_type!
bam
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
87 results
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total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
20
20
3
1
3
1
1
1
right lobe of liver
1
1
1
cell line
HepG2
9
16
2
2
2
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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