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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
489
ChIP-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
2
RRBS
2
STARR-seq
1
whole genome sequencing assay
Assay category
489
DNA binding
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
305
transcription factor
95
control
86
histone modification
85
histone
82
recombinant protein
54
RNA binding protein
53
narrow histone mark
32
broad histone mark
20
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
December, 2017
54
August, 2017
53
November, 2018
51
May, 2020
26
August, 2021
20
May, 2022
6
October, 2019
3
July, 2019
2
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
Available data
456
bam
410
bigWig
397
fastq
391
bed narrowPeak
308
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
bed bed3
1
hdf5
1
vcf
Organism
535
Homo sapiens
Biosample type
387
cell line
139
tissue
9
primary cell
Organ
535
liver
459
pancreas
303
epithelium
262
brain
229
kidney
227
heart
202
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
89
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
22
vein
18
ureter
12
skeleton
10
embryo
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
535
AMP
Genome assembly (visualization)
413
hg19
319
GRCh38
Lab
493
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
December, 2017
assay_slims!
Transcription
BIOSAMPLE
ASSAY
535 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
STARR-seq
whole genome sequencing assay
cell line
HepG2
378
1
1
2
2
2
1
tissue
liver
107
20
2
3
1
1
1
right lobe of liver
1
2
1
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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