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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
4
ChIP-seq
2
DNase-seq
1
Hi-C
1
RRBS
Assay category
5
Transcription
4
DNA binding
2
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
5
December, 2019
4
August, 2021
2
July, 2019
2
June, 2019
October, 2019
Available data
11
bam
11
bigWig
6
bed bed3+
5
bed narrowPeak
5
tsv
4
tagAlign
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
13
Homo sapiens
Biosample type
401
cell line
355
tissue
15
in vitro differentiated cells
13
primary cell
Organ
373
epithelium
346
pancreas
39
connective tissue
25
kidney
21
brain
16
vasculature
14
musculature of body
13
heart
13
liver
10
blood vessel
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
13
AMP
Genome assembly (visualization)
12
hg19
10
GRCh38
Lab
13
AMP-T2D consortium
month_released!
October, 2019
BIOSAMPLE
ASSAY
13 results
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total RNA-seq
ChIP-seq
DNase-seq
Hi-C
RRBS
primary cell
hepatocyte
5
4
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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