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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
498
ChIP-seq
188
total RNA-seq
22
ATAC-seq
4
Hi-C
4
WGBS
3
DNase-seq
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
498
DNA binding
192
Transcription
25
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
289
transcription factor
108
control
98
histone modification
97
histone
66
recombinant protein
58
narrow histone mark
39
RNA binding protein
39
broad histone mark
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
621
bam
564
bigWig
412
fastq
384
bed narrowPeak
307
bigBed narrowPeak
173
tsv
86
tagAlign
60
bed broadPeak
60
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
731
Homo sapiens
Biosample type
355
cell line
348
tissue
15
in vitro differentiated cells
13
primary cell
Organ
913
pancreas
731
liver
678
connective tissue
488
adipose tissue
488
epithelium
385
heart
324
kidney
198
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
54
blood
54
bodily fluid
53
limb
40
eye
37
embryo
19
lung
18
ureter
16
skeleton
16
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
731
AMP
Genome assembly (visualization)
569
hg19
472
GRCh38
Lab
660
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
month_released!
October, 2019
November, 2018
BIOSAMPLE
ASSAY
731 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
DNase-seq
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
333
14
1
2
2
2
1
tissue
liver
136
166
20
1
3
1
1
1
1
right lobe of liver
10
3
1
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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