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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
449
ChIP-seq
188
total RNA-seq
22
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
449
DNA binding
192
Transcription
28
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
histone modification
97
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
39
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
167
May, 2020
53
November, 2018
46
December, 2017
40
May, 2022
29
August, 2021
21
August, 2017
10
July, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
October, 2019
1
December, 2018
1
February, 2020
Available data
599
bam
538
bigWig
420
fastq
359
bed narrowPeak
323
bigBed narrowPeak
173
tsv
49
bed broadPeak
49
bigBed broadPeak
28
tagAlign
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
686
Homo sapiens
Biosample type
383
cell line
290
tissue
10
primary cell
3
in vitro differentiated cells
Organ
782
pancreas
686
liver
602
connective tissue
457
adipose tissue
416
epithelium
302
kidney
293
heart
159
bone element
151
vasculature
146
blood vessel
113
artery
90
brain
68
blood
68
bodily fluid
63
musculature of body
47
limb
39
eye
25
embryo
19
lung
19
spleen
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
686
AMP
Genome assembly (visualization)
540
hg19
459
GRCh38
Lab
618
AMP-T2D consortium
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
686 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
360
14
1
1
2
2
2
1
tissue
liver
80
166
20
2
3
1
1
1
1
1
right lobe of liver
5
3
1
2
1
2
primary cell
hepatocyte
1
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
3
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