Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
30
total RNA-seq
20
ATAC-seq
10
single cell RNA-seq
9
snATAC-seq
4
Hi-C
4
WGBS
4
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
whole genome sequencing assay
Assay category
192
DNA binding
40
Transcription
30
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
107
control
52
transcription factor
33
histone
33
histone modification
19
narrow histone mark
14
broad histone mark
7
RNA binding protein
2
chromatin remodeller
1
recombinant protein
Date released
98
November, 2017
40
May, 2022
35
August, 2017
32
August, 2021
32
May, 2020
18
April, 2020
13
December, 2017
3
July, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
1
November, 2018
Available data
150
bam
122
fastq
94
bigWig
74
bed narrowPeak
55
tagAlign
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
13
tsv
3
tar
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
1
hdf5
1
vcf
Organism
279
Homo sapiens
Biosample type
142
tissue
133
cell line
3
primary cell
1
in vitro differentiated cells
Organ
309
pancreas
260
liver
229
epithelium
149
kidney
127
heart
117
connective tissue
93
bone element
69
brain
66
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
19
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
261
AMP
18
LungMap
Genome assembly (visualization)
625
hg19
GRCh38
Lab
190
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
18
Xin Sun, UCSD
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
BIOSAMPLE
ASSAY
279 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
whole genome sequencing assay
tissue
liver
70
20
20
1
1
3
1
1
lung
9
9
1
right lobe of liver
3
1
1
1
cell line
HepG2
117
9
2
2
2
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
Download