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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
130
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
130
DNA binding
25
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
45
December, 2017
40
May, 2022
35
August, 2017
8
July, 2019
7
November, 2018
3
March, 2020
3
October, 2019
1
February, 2020
1
February, 2021
Available data
275
bam
252
bigWig
154
tsv
100
bed narrowPeak
73
fastq
59
tagAlign
42
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
336
Homo sapiens
Biosample type
392
cell line
336
tissue
13
primary cell
8
in vitro differentiated cells
Organ
527
connective tissue
468
adipose tissue
464
pancreas
336
liver
289
kidney
256
heart
195
brain
158
bone element
97
blood vessel
97
vasculature
88
limb
66
musculature of body
59
artery
56
eye
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
336
AMP
Genome assembly (visualization)
255
hg19
225
GRCh38
Lab
296
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
336 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
123
20
2
3
1
1
1
1
1
right lobe of liver
3
7
1
2
1
2
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