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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
444
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
pCHi-C
3
small RNA-seq
2
Hi-C
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
444
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
2
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
259
November, 2017
171
May, 2020
53
November, 2018
50
December, 2017
43
August, 2017
40
May, 2022
29
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
1
February, 2020
Available data
609
bigWig
580
bam
441
bed narrowPeak
388
fastq
358
bigBed narrowPeak
174
tsv
63
bed broadPeak
63
bigBed broadPeak
58
tagAlign
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
681
Homo sapiens
Biosample type
340
cell line
314
tissue
14
in vitro differentiated cells
13
primary cell
Organ
886
pancreas
681
liver
649
connective tissue
488
epithelium
467
adipose tissue
341
kidney
330
heart
255
brain
211
vasculature
206
blood vessel
159
bone element
132
artery
105
limb
88
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
18
ureter
18
vein
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
681
AMP
Genome assembly (visualization)
609
hg19
530
GRCh38
Lab
615
AMP-T2D consortium
40
Karen Mohlke, UNC
26
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
control
files.file_type!
hic
BIOSAMPLE
ASSAY
681 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
318
14
1
1
2
1
2
1
tissue
liver
102
167
20
2
3
1
1
1
1
right lobe of liver
7
3
1
2
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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