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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
Hi-C
1
RRBS
Assay category
5
Transcription
3
DNA accessibility
1
3D chromatin structure
1
DNA binding
1
DNA methylation
Target of assay
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
5
December, 2019
2
July, 2019
2
June, 2019
1
August, 2021
1
October, 2019
Available data
9
bam
8
bigWig
5
tsv
3
bed bed3+
3
bed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
tagAlign
Organism
11
Homo sapiens
Biosample type
383
cell line
292
tissue
11
primary cell
3
in vitro differentiated cells
Organ
340
epithelium
288
pancreas
31
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
11
AMP
Genome assembly (visualization)
10
hg19
8
GRCh38
Lab
11
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
11 results
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Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
ChIP-seq
Hi-C
RRBS
primary cell
hepatocyte
5
1
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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