Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
467
ChIP-seq
196
total RNA-seq
42
DNase-seq
31
ATAC-seq
8
Hi-C
6
WGBS
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
467
DNA binding
200
Transcription
73
DNA accessibility
8
3D chromatin structure
8
DNA methylation
1
DNA sequencing
Target of assay
338
transcription factor
152
histone modification
histone
125
control
82
recombinant protein
76
broad histone mark
75
narrow histone mark
58
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
167
May, 2020
53
November, 2018
46
December, 2017
40
May, 2022
34
June, 2019
29
August, 2021
28
October, 2019
22
August, 2017
15
July, 2019
9
February, 2021
5
December, 2019
5
January, 2019
4
February, 2020
3
March, 2020
1
December, 2018
1
May, 2019
Available data
668
bam
583
bigWig
421
fastq
405
bed narrowPeak
359
bigBed narrowPeak
181
tsv
85
bed broadPeak
85
bigBed broadPeak
46
bed bed3+
28
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
762
Homo sapiens
Biosample type
383
cell line
365
tissue
11
primary cell
3
in vitro differentiated cells
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
762
AMP
Genome assembly (visualization)
591
hg19
511
GRCh38
Lab
694
AMP-T2D consortium
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
histone
BIOSAMPLE
ASSAY
762 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
360
14
1
2
1
2
2
1
tissue
liver
81
167
2
20
1
3
1
1
1
1
tibial nerve
11
5
2
1
muscle of arm
17
muscle of leg
1
13
1
right lobe of liver
5
3
2
1
1
2
+ See 10 more…
primary cell
hepatocyte
1
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
3
See all biosamples
Download