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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
449
ChIP-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
2
RRBS
2
STARR-seq
1
whole genome sequencing assay
Assay category
449
DNA binding
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
53
November, 2018
46
December, 2017
24
May, 2020
21
August, 2017
20
August, 2021
20
May, 2022
3
July, 2019
2
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
1
October, 2019
Available data
439
bam
415
fastq
377
bigWig
360
bed narrowPeak
323
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
28
tagAlign
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
bed bed3
1
hdf5
1
vcf
Organism
495
Homo sapiens
Biosample type
369
cell line
117
tissue
6
primary cell
3
in vitro differentiated cells
Organ
495
liver
316
pancreas
230
epithelium
199
kidney
125
connective tissue
125
heart
98
vasculature
97
bone element
93
blood vessel
75
brain
68
blood
68
bodily fluid
66
limb
63
artery
58
adipose tissue
54
musculature of body
39
eye
19
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
11
lung
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
495
AMP
Genome assembly (visualization)
380
hg19
299
GRCh38
Lab
456
AMP-T2D consortium
20
Karen Mohlke, UNC
19
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
histone modification
assay_slims!
Transcription
BIOSAMPLE
ASSAY
495 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
STARR-seq
whole genome sequencing assay
cell line
HepG2
360
1
1
2
2
2
1
tissue
liver
80
20
2
3
1
1
1
right lobe of liver
5
1
2
1
primary cell
hepatocyte
1
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
3
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