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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
449
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
449
DNA binding
Target of assay
338
transcription factor
108
control
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
49
November, 2018
46
December, 2017
23
May, 2020
16
August, 2021
15
August, 2017
Available data
430
bam
407
fastq
349
bigWig
332
bed narrowPeak
317
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
28
tagAlign
3
bed bed3+
3
tar
Organism
449
Homo sapiens
Biosample type
360
cell line
85
tissue
3
in vitro differentiated cells
1
primary cell
Organ
449
liver
75
connective tissue
67
pancreas
59
blood
59
bodily fluid
41
adipose tissue
36
epithelium
32
heart
31
brain
31
vasculature
29
blood vessel
22
kidney
17
limb
14
artery
14
spleen
11
nerve
10
embryo
6
musculature of body
2
eye
2
vein
Project
449
AMP
Genome assembly (visualization)
346
hg19
290
GRCh38
Lab
434
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
449 results
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Clear Filters
ChIP-seq
cell line
HepG2
360
tissue
liver
80
right lobe of liver
5
in vitro differentiated cells
hepatocyte
3
primary cell
hepatocyte
1
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