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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
433
ChIP-seq
180
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
433
DNA binding
184
Transcription
29
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
103
control
histone modification
96
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
167
May, 2020
53
November, 2018
46
December, 2017
40
May, 2022
August, 2021
21
August, 2017
10
July, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
Available data
600
bam
528
bigWig
420
fastq
349
bed narrowPeak
323
bigBed narrowPeak
165
tsv
49
bed broadPeak
49
bigBed broadPeak
27
tagAlign
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
659
Homo sapiens
Biosample type
355
cell line
291
tissue
10
primary cell
3
in vitro differentiated cells
Organ
791
pancreas
659
liver
601
connective tissue
458
adipose tissue
428
epithelium
199
heart
194
kidney
159
bone element
159
vasculature
154
blood vessel
119
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
20
lung
19
nerve
19
spleen
18
ureter
17
embryo
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
659
AMP
Genome assembly (visualization)
530
hg19
461
GRCh38
Lab
619
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
histone modification
month_released!
August, 2021
BIOSAMPLE
ASSAY
659 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
cell line
HepG2
345
5
1
1
1
2
tissue
liver
80
167
20
2
3
1
1
1
1
1
right lobe of liver
5
3
1
2
1
2
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
3
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