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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
550
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
550
DNA binding
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
other context
2
other post-translational modification
Date released
313
November, 2017
63
December, 2017
50
May, 2020
49
November, 2018
48
August, 2017
22
August, 2021
5
October, 2019
Available data
508
bam
450
fastq
430
bigWig
411
bed narrowPeak
350
bigBed narrowPeak
86
tagAlign
57
bed broadPeak
57
bigBed broadPeak
6
bed bed3+
3
tar
Organism
550
Homo sapiens
Biosample type
376
cell line
155
tissue
15
in vitro differentiated cells
4
primary cell
Organ
550
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
17
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
550
AMP
Genome assembly (visualization)
427
hg19
358
GRCh38
Lab
532
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
other context
BIOSAMPLE
ASSAY
550 results
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Clear Filters
ChIP-seq
cell line
HepG2
376
tissue
liver
145
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
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