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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
550
ChIP-seq
23
ATAC-seq
20
total RNA-seq
6
DNase-seq
5
WGBS
4
Hi-C
2
RRBS
2
STARR-seq
1
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
550
DNA binding
29
DNA accessibility
21
Transcription
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
other context
2
other post-translational modification
Date released
313
November, 2017
63
December, 2017
54
August, 2017
53
November, 2018
50
May, 2020
40
May, 2022
26
August, 2021
6
October, 2019
3
February, 2021
3
July, 2019
2
June, 2019
1
December, 2018
1
March, 2020
Available data
679
bam
620
bigWig
463
fastq
439
bed narrowPeak
356
bigBed narrowPeak
tsv
86
tagAlign
62
bed broadPeak
62
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
615
Homo sapiens
Biosample type
384
cell line
207
tissue
15
in vitro differentiated cells
9
primary cell
Organ
615
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
23
embryo
22
vein
21
spleen
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
615
AMP
Genome assembly (visualization)
461
hg19
367
GRCh38
Lab
553
AMP-T2D consortium
40
Karen Mohlke, UNC
22
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
other context
files.file_type!
tsv
BIOSAMPLE
ASSAY
615 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
RRBS
STARR-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
376
1
1
2
2
1
1
tissue
liver
145
20
20
2
3
1
1
1
right lobe of liver
10
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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