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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
10
snATAC-seq
1
GRO-seq
pCHi-C
Assay category
Transcription
22
DNA binding
10
DNA accessibility
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
10
April, 2020
9
February, 2018
1
January, 2018
Available data
23
fastq
22
bam
15
bigWig
14
bed narrowPeak
3
bed bed3+
Organism
32
Homo sapiens
Biosample type
23
in vitro differentiated cells
10
tissue
Organ
595
liver
466
pancreas
323
epithelium
260
brain
227
kidney
224
heart
198
connective tissue
168
vasculature
162
blood vessel
115
limb
96
bone element
88
adipose tissue
86
musculature of body
83
artery
69
blood
69
bodily fluid
38
eye
38
nerve
24
spleen
23
embryo
22
vein
18
ureter
12
skeleton
10
lung
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
Project
23
AMP
10
LungMap
Genome assembly (visualization)
15
GRCh38
15
hg19
1
hg18
Lab
23
AMP-T2D consortium
10
Xin Sun, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
pCHi-C
assay_slims!
Transcription
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
snATAC-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
tissue
lung
10
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