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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
60
total RNA-seq
46
ATAC-seq
15
single cell RNA-seq
10
snATAC-seq
6
DNase-seq
2
WGBS
pCHi-C
1
Hi-C
Assay category
79
DNA binding
75
Transcription
62
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
35
February, 2023
26
October, 2019
19
April, 2020
8
July, 2019
6
August, 2021
4
June, 2019
3
February, 2020
2
March, 2020
Available data
155
bam
128
bigWig
113
bed narrowPeak
66
tsv
63
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
218
Homo sapiens
Biosample type
151
tissue
66
cell line
2
primary cell
Organ
945
pancreas
788
liver
679
connective tissue
epithelium
489
adipose tissue
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
200
AMP
19
LungMap
Genome assembly (visualization)
171
GRCh38
136
hg19
Lab
200
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
pCHi-C
organ_slims!
epithelium
BIOSAMPLE
ASSAY
219 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
WGBS
Hi-C
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
ascending aorta
16
2
1
lung
9
10
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
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