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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
5
ChIP-seq
pCHi-C
4
DNase-seq
1
RRBS
Assay category
42
DNA accessibility
28
Transcription
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
19
April, 2020
17
October, 2019
7
June, 2019
1
February, 2020
1
July, 2019
Available data
33
bed narrowPeak
7
bam
6
bigBed narrowPeak
6
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
75
Homo sapiens
Biosample type
71
tissue
5
primary cell
Organ
945
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
57
AMP
19
LungMap
Genome assembly (visualization)
34
hg19
6
GRCh38
Lab
57
AMP-T2D consortium
19
Xin Sun, UCSD
assay_title!
pCHi-C
organ_slims!
vein
BIOSAMPLE
ASSAY
76 results
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ATAC-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
ChIP-seq
DNase-seq
RRBS
tissue
retina
15
3
3
lung
10
9
islet of Langerhans
1
14
2
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
3
1
1
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