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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
snATAC-seq
9
single cell RNA-seq
5
ChIP-seq
5
pCHi-C
4
DNase-seq
1
RRBS
Assay category
32
DNA accessibility
28
Transcription
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
21
October, 2019
9
April, 2020
7
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
33
bed narrowPeak
7
bam
6
bigBed narrowPeak
6
bigWig
6
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
71
Homo sapiens
Biosample type
66
tissue
5
primary cell
Organ
935
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
353
heart
348
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
95
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
9
LungMap
Genome assembly (visualization)
34
hg19
6
GRCh38
Lab
62
AMP-T2D consortium
9
Xin Sun, UCSD
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
71 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
pCHi-C
DNase-seq
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
3
pigmented layer of retina
12
2
lung
9
1
primary cell
retinal pigment epithelial cell
3
1
1
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