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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
28
ChIP-seq
11
single cell RNA-seq
10
snATAC-seq
4
DNase-seq
2
total RNA-seq
1
pCHi-C
Assay category
51
DNA accessibility
28
DNA binding
13
Transcription
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
35
February, 2023
26
October, 2019
19
April, 2020
5
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
July, 2019
1
March, 2020
Available data
62
bed narrowPeak
34
bam
27
bigWig
25
bigBed narrowPeak
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
92
Homo sapiens
Biosample type
93
tissue
66
cell line
2
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
74
AMP
19
LungMap
Genome assembly (visualization)
62
GRCh38
27
hg19
Lab
74
AMP-T2D consortium
19
Xin Sun, UCSD
BIOSAMPLE
ASSAY
93 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
DNase-seq
total RNA-seq
pCHi-C
tissue
coronary artery
36
5
2
1
tibial artery
1
23
2
1
lung
9
10
1
pulmonary artery
2
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