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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
60
total RNA-seq
46
ATAC-seq
23
DNase-seq
15
single cell RNA-seq
10
snATAC-seq
2
WGBS
2
pCHi-C
1
Hi-C
Assay category
79
DNA accessibility
79
DNA binding
75
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
35
February, 2023
26
October, 2019
21
June, 2019
19
April, 2020
8
July, 2019
6
August, 2021
4
March, 2020
3
February, 2020
Available data
172
bam
145
bigWig
130
bed narrowPeak
80
bigBed narrowPeak
68
tsv
23
bed bed3+
23
bed broadPeak
23
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
237
Homo sapiens
Biosample type
171
tissue
66
cell line
1
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
219
AMP
19
LungMap
Genome assembly (visualization)
188
GRCh38
153
hg19
Lab
219
AMP-T2D consortium
19
Xin Sun, UCSD
organ_slims!
epithelium
BIOSAMPLE
ASSAY
238 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
1
lung
9
10
1
ascending aorta
16
2
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the coronary artery
1
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