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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
41
ATAC-seq
23
total RNA-seq
18
snATAC-seq
9
single cell RNA-seq
5
pCHi-C
4
DNase-seq
1
RRBS
Assay category
65
DNA binding
63
DNA accessibility
32
Transcription
1
DNA methylation
Target of assay
52
transcription factor
11
RNA binding protein
10
chromatin remodeller
7
control
4
histone
4
histone modification
4
narrow histone mark
Date released
39
February, 2023
27
December, 2018
21
October, 2019
19
April, 2020
18
January, 2019
15
November, 2018
8
February, 2021
8
January, 2021
7
June, 2019
1
February, 2020
1
January, 2018
1
July, 2019
1
March, 2020
Available data
95
bed narrowPeak
75
bam
61
bigWig
60
bigBed narrowPeak
60
fastq
6
tsv
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
txt
1
bed bedMethyl
1
bigBed bedMethyl
Organism
165
Homo sapiens
Biosample type
92
tissue
61
cell line
13
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
139
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
101
hg19
68
GRCh38
Lab
139
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
BIOSAMPLE
ASSAY
166 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
RRBS
tissue
islet of Langerhans
2
1
14
4
retina
15
3
3
lung
10
9
1
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
+ See 11 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
1
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