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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
18
snATAC-seq
9
single cell RNA-seq
2
pCHi-C
1
ATAC-seq
Assay category
60
DNA binding
19
DNA accessibility
9
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
19
April, 2020
18
January, 2019
15
November, 2018
8
January, 2021
2
March, 2020
1
January, 2018
Available data
60
bam
60
fastq
55
bigWig
54
bed narrowPeak
54
bigBed narrowPeak
2
tsv
Organism
89
Homo sapiens
Biosample type
61
cell line
21
tissue
8
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
63
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
55
hg19
54
GRCh38
Lab
63
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
pCHi-C
ATAC-seq
cell line
GM12878
60
1
tissue
lung
10
9
1
sigmoid colon
1
primary cell
peripheral blood mononuclear cell
8
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