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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
133
ChIP-seq
18
snATAC-seq
9
single cell RNA-seq
7
ATAC-seq
6
WGBS
3
pCHi-C
3
small RNA-seq
2
DNase-seq
1
RNA microarray
Assay category
410
Transcription
133
DNA binding
27
DNA accessibility
6
DNA methylation
Target of assay
68
transcription factor
33
histone
33
histone modification
30
control
20
broad histone mark
15
RNA binding protein
13
narrow histone mark
10
chromatin remodeller
Date released
386
February, 2021
57
August, 2017
27
December, 2018
23
October, 2018
19
April, 2020
18
January, 2019
16
November, 2018
12
July, 2019
8
January, 2021
2
February, 2020
2
January, 2018
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
502
bam
480
bigWig
402
tsv
104
fastq
67
bed narrowPeak
64
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
578
Homo sapiens
Biosample type
508
tissue
61
cell line
10
primary cell
1
in vitro differentiated cells
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
553
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
481
hg19
478
GRCh38
Lab
553
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
580 results
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total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
lung
10
9
1
omental fat pad
5
11
1
1
2
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cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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