Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
18
snATAC-seq
9
single cell RNA-seq
5
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
95
DNA binding
22
DNA accessibility
14
Transcription
Target of assay
51
transcription factor
25
histone
25
histone modification
17
control
16
broad histone mark
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
Date released
42
October, 2019
27
December, 2018
19
April, 2020
18
January, 2019
15
November, 2018
8
January, 2021
1
February, 2020
1
January, 2018
1
March, 2020
Available data
102
bam
86
bigWig
81
bed narrowPeak
80
bigBed narrowPeak
60
fastq
6
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
131
Homo sapiens
Biosample type
63
tissue
61
cell line
8
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
105
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
86
hg19
85
GRCh38
Lab
105
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
BIOSAMPLE
ASSAY
132 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
snATAC-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
tissue
tibial nerve
35
5
1
2
lung
10
9
1
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
Download