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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
9
single cell RNA-seq
6
total RNA-seq
4
WGBS
4
pCHi-C
2
Capture-C
1
RNA microarray
Assay category
75
DNA binding
DNA accessibility
15
Transcription
4
DNA methylation
Target of assay
44
histone
44
histone modification
31
control
28
broad histone mark
16
narrow histone mark
Date released
60
August, 2017
18
October, 2018
9
April, 2020
4
February, 2023
3
August, 2021
3
March, 2020
2
February, 2020
1
August, 2018
1
October, 2019
Available data
26
fastq
24
bam
22
tagAlign
5
tsv
2
bed bed3+
1
bed broadPeak
1
bed narrowPeak
1
bedpe bed3+
1
bigWig
Organism
100
Homo sapiens
Biosample type
74
tissue
26
in vitro differentiated cells
primary cell
1
stem cell
Organ
236
liver
134
kidney
124
heart
91
connective tissue
90
pancreas
88
bone element
64
adipose tissue
59
brain
38
musculature of body
30
blood vessel
30
vasculature
26
limb
25
eye
19
epithelium
13
artery
12
nerve
10
lung
9
spleen
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
92
AMP
9
LungMap
Genome assembly (visualization)
529
hg19
GRCh38
Lab
90
AMP-T2D consortium
9
Xin Sun, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA accessibility
assembly!
GRCh38
biosample_type!
primary cell
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
pCHi-C
Capture-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
10
1
1
lung
9
1
omental fat pad
8
1
adipose tissue
1
1
1
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in vitro differentiated cells
adipocyte
19
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
white fat cell
1
stem cell
mesenchymal stem cell
1
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