Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
455
total RNA-seq
74
ChIP-seq
9
single cell RNA-seq
6
WGBS
2
pCHi-C
2
small RNA-seq
1
RNA microarray
Assay category
466
Transcription
74
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
33
histone
33
histone modification
24
control
20
broad histone mark
17
transcription factor
13
narrow histone mark
5
RNA binding protein
Date released
444
February, 2021
56
August, 2017
23
October, 2018
10
July, 2019
9
April, 2020
2
February, 2020
2
March, 2020
1
August, 2021
1
May, 2023
1
October, 2019
Available data
493
bam
475
bigWig
458
tsv
40
fastq
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
Organism
548
Homo sapiens
Biosample type
549
tissue
79
in vitro differentiated cells
31
primary cell
1
stem cell
Organ
539
connective tissue
480
adipose tissue
423
pancreas
336
liver
233
brain
207
heart
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
540
AMP
9
LungMap
Genome assembly (visualization)
475
GRCh38
474
hg19
Lab
540
AMP-T2D consortium
9
Xin Sun, UCSD
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
549 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
+ See 4 more…
See all biosamples
Download