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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
136
ChIP-seq
25
ATAC-seq
13
single cell RNA-seq
10
snATAC-seq
9
DNase-seq
6
WGBS
6
pCHi-C
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
136
DNA binding
Target of assay
78
histone
78
histone modification
44
broad histone mark
35
control
33
narrow histone mark
23
transcription factor
10
RNA binding protein
2
chromatin remodeller
Date released
100
August, 2017
23
October, 2018
12
June, 2019
1
October, 2019
Available data
85
bam
73
fastq
58
bed narrowPeak
58
bigWig
22
tagAlign
15
bigBed narrowPeak
7
bed bed3+
1
bed broadPeak
Organism
136
Homo sapiens
Biosample type
62
in vitro differentiated cells
62
tissue
12
primary cell
Organ
539
liver
214
brain
164
pancreas
136
connective tissue
134
heart
108
epithelium
102
vasculature
99
blood vessel
66
limb
61
adipose tissue
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
21
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
0
lung
Project
136
AMP
Genome assembly (visualization)
59
hg19
58
GRCh38
Lab
136
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
136 results
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Clear Filters
ChIP-seq
in vitro differentiated cells
adipocyte
62
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
12
omental fat pad
11
adipose tissue
2
islet of Langerhans
1
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
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