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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
535
total RNA-seq
ChIP-seq
71
ATAC-seq
20
DNase-seq
19
single cell RNA-seq
10
snATAC-seq
8
WGBS
7
pCHi-C
6
Hi-C
3
small RNA-seq
2
Capture-C
2
RRBS
1
FAIRE-seq
1
RNA microarray
Assay category
557
Transcription
102
DNA accessibility
10
DNA methylation
6
3D chromatin structure
Date released
515
February, 2021
49
February, 2023
30
July, 2019
19
April, 2020
13
June, 2019
11
August, 2021
10
October, 2019
8
August, 2017
7
March, 2020
6
November, 2020
5
February, 2020
2
April, 2018
2
July, 2018
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
574
bam
571
bigWig
547
tsv
75
bed narrowPeak
29
bed bed3+
25
bigBed narrowPeak
20
bed broadPeak
20
bigBed broadPeak
11
fastq
6
bed bed3
5
bed bedMethyl
5
bigBed bedMethyl
4
bed bedgraph
3
bedpe bed3+
3
hdf5
3
hic
1
tar
Organism
683
Homo sapiens
Biosample type
553
tissue
60
cell line
41
primary cell
30
in vitro differentiated cells
1
stem cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
665
AMP
19
LungMap
1
T1D
Genome assembly (visualization)
607
GRCh38
599
hg19
Lab
661
AMP-T2D consortium
19
Xin Sun, UCSD
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
685 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
Capture-C
RRBS
FAIRE-seq
RNA microarray
tissue
adipose tissue
382
3
3
1
bone tissue
58
coronary artery
1
36
2
lung
9
10
1
subcutaneous adipose tissue
7
1
1
1
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
osteoblast
5
2
1
1
endothelial cell of umbilical vein
2
2
1
cardiac fibroblast
3
1
pancreatic stellate cell
4
brain microvascular endothelial cell
1
1
+ See 14 more…
in vitro differentiated cells
adipocyte
5
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
See all biosamples
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