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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
10
snATAC-seq
9
single cell RNA-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
66
DNA binding
54
DNA accessibility
16
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
19
April, 2020
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
March, 2020
Available data
114
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
140
Homo sapiens
Biosample type
141
tissue
Organ
932
pancreas
788
liver
682
connective tissue
518
epithelium
490
adipose tissue
352
kidney
346
heart
284
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
122
AMP
19
LungMap
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
122
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
month_released!
March, 2020
BIOSAMPLE
ASSAY
141 results
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ChIP-seq
DNase-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
1
lung
10
9
muscle of arm
17
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