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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
36
DNase-seq
10
snATAC-seq
9
single cell RNA-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
59
DNA binding
54
DNA accessibility
16
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
43
histone
43
histone modification
30
broad histone mark
16
control
13
narrow histone mark
Date released
69
October, 2019
32
June, 2019
19
April, 2020
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
Available data
107
bam
86
bed narrowPeak
85
bigWig
78
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
134
Homo sapiens
Biosample type
135
tissue
Organ
944
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
349
kidney
332
heart
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
116
AMP
19
LungMap
Genome assembly (visualization)
91
GRCh38
90
hg19
Lab
116
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
month_released!
May, 2019
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
DNase-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
lung
10
9
1
muscle of arm
17
muscle of leg
13
1
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