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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
35
DNase-seq
11
snATAC-seq
11
total RNA-seq
10
single cell RNA-seq
6
Hi-C
5
RRBS
2
ATAC-seq
2
pCHi-C
2
small RNA-seq
1
WGBS
Assay category
74
DNA binding
48
DNA accessibility
23
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
57
histone
57
histone modification
36
broad histone mark
21
narrow histone mark
17
control
Date released
43
June, 2019
42
October, 2019
26
August, 2017
19
April, 2020
10
July, 2019
7
May, 2019
6
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
99
bam
99
bigWig
87
bed narrowPeak
73
bigBed narrowPeak
48
bed broadPeak
36
bed bed3+
35
bigBed broadPeak
15
tagAlign
15
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
158
Homo sapiens
Biosample type
145
tissue
14
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
140
AMP
19
LungMap
Genome assembly (visualization)
104
hg19
84
GRCh38
Lab
140
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
159 results
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ChIP-seq
DNase-seq
snATAC-seq
total RNA-seq
single cell RNA-seq
Hi-C
RRBS
ATAC-seq
pCHi-C
small RNA-seq
WGBS
tissue
tibial nerve
35
2
5
1
skeletal muscle tissue
22
1
1
1
4
1
1
muscle of leg
7
13
1
lung
10
9
1
muscle of arm
17
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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