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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
4
DNase-seq
3
Hi-C
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
1
total RNA-seq
Assay category
41
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
Transcription
Target of assay
34
histone
34
histone modification
23
broad histone mark
11
narrow histone mark
7
control
Date released
66
February, 2021
50
May, 2019
48
October, 2019
35
February, 2023
11
July, 2019
6
August, 2021
5
June, 2019
4
March, 2020
3
February, 2020
3
November, 2017
Available data
47
bam
37
bigWig
34
bed narrowPeak
33
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
4
bed bed3+
3
hic
2
bedpe bed3+
2
tsv
1
tar
Organism
52
Homo sapiens
Biosample type
30
tissue
22
primary cell
Organ
88
brain
69
limb
51
blood vessel
51
vasculature
42
nerve
41
epithelium
32
kidney
32
pancreas
26
artery
22
vein
21
eye
15
heart
10
liver
6
connective tissue
5
gonad
5
musculature of body
5
ovary
2
adipose tissue
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
40
hg19
34
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
1
audit script error
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
pCHi-C
total RNA-seq
tissue
tibial artery
23
2
1
aorta
1
1
1
islet of Langerhans
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
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