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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
33
total RNA-seq
8
ATAC-seq
7
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
139
DNA binding
34
Transcription
9
DNA accessibility
7
3D chromatin structure
6
DNA methylation
1
DNA sequencing
Target of assay
112
control
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
36
August, 2017
24
May, 2020
20
May, 2022
19
October, 2019
18
August, 2021
13
December, 2017
9
February, 2021
6
July, 2019
4
February, 2020
2
March, 2020
1
December, 2018
1
May, 2019
1
November, 2018
Available data
795
bam
bigWig
533
bed narrowPeak
465
fastq
442
bigBed narrowPeak
181
tsv
99
bed broadPeak
99
bigBed broadPeak
86
tagAlign
49
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
201
Homo sapiens
Biosample type
128
tissue
69
cell line
3
primary cell
1
in vitro differentiated cells
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
201
AMP
Genome assembly (visualization)
14
hg19
9
GRCh38
Lab
164
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
201 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
20
1
3
1
1
1
tibial nerve
11
1
right lobe of liver
3
1
1
1
tibial artery
5
1
gastrocnemius medialis
1
4
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cell line
HepG2
52
9
1
2
2
2
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
See all biosamples
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